Clinical-Genomics
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  • Introduction
  • Documentation
    • Setup
    • References
    • Analysis
    • Parameters
    • Recipes
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      • Adding an env
    • API
      • Define Parameters
      • Download References
      • Identifiers
      • Initiation File
      • Install
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      • Pedigree
      • QC metrics
      • Sample info
      • Tests
        • Log
        • Data
      • Subroutines
    • Cli
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QC metrics

Version: 1.0.0

The qc metric data on the case and samples are recorded in a yaml outfile format with the following data structure and keys:

recipe: { #Hash of hashes
    [METADATA_KEY] = string,
    version = string,
  },
},
sample: { #Hash of hashes
    [INFILE_PREFIX]: {
      [PROGRAM_NAME]: {
        [HEADER_ID]: {
          [COMPARISON]: {
            [METRIC_KEY]: <data_type>,
          },
        },
        [METRIC_KEY]: <data_type>,
        version = string,
      },
    },
    [METRIC_KEY]: <data_type>,
  },
}
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Last updated 6 years ago