Clinical-Genomics
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  • Introduction
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    • Setup
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    • Analysis
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    • Recipes
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      • Initiation File
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      • Pedigree
      • QC metrics
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      • Subroutines
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Pedigree

Version: 1.0.0

The metadata on the case is recorded in a yaml file format with the following data structure and keys:

case: string,
samples: [  # Array of hashes
  - { # Sample specific info hash
      analysis_type: string, value="wes | wgs | wts"
      capture_kit: string, 
      expected_coverage: Integer,
      father: string, value="<case_id> | 0"
      mother: string, value="<case_id> | 0"
      phenotype: string, value="affected | unaffected | unknown"
      sample_id: string,
      sample_display_name: string,
      is_from_sample: string, value="<sample_id>""
      sex: string, value="male | female | other"
      time_point: Integer,
    }
  - {
      analysis_type: string, value="wes | wgs | wts"
    .,
    .,
    }
],
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Last updated 5 years ago